species:   Scscl
pid:       PID1710
parent:    Ssc-milR-186
paralog:   
locus:     NW_001820833.1:556237-556331
matures:   ['UAGAAUGAGGUUUUAGCCUGA', 'GGGACUAUGGCCUUUUUCAGAACU']
srr:       SRR12527895
genome:    /Users/jax/+Genomes/Fungal_genomes/Scscl.GCF_000146945.2_ASM14694v2.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Xia2020-rh.SRR12527895.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Xia2020-rh.SRR12527895.cram NW_001820833.1:556237-556331

0 out of bounds
7 alignments
7 proper strand
6 stranded perfect matches

                   **************************                 ***********************          
AUAGAGUUGUUUCAUUGCCUUGGGACUAUGGCCUUUUUCAGAACUAGUAAGUUUAAUUAUUCGGUAGAAUGAGGUUUUAGCCUGAGUAGCUCGGA
...((((((.........((((((.(((.((((((.(((...((((((((......))))).))).))).)))))).)))))))))))))))...
----------------------------------------------------------------UAGAAUGAGGUUUUAGCCUGA---------- l=21 a=4 c
---------------------GGGACUAUGGCCUUUUUCAGAACU-------------------------------------------------- l=24 a=0 c*
----------------------------------------------------------------UAGAAUGAGGUUUUAGCCUGA---------- l=21 a=4 ma
---------------------GGGACUAUGGCCUUUUUCAGAACU-------------------------------------------------- l=24 a=0 ma*

-----------------------------------------------------------UUCGGUAGAAUGAGGUUUUAGCCU------------ l=24 a=1 
------------------------------------------------------------UCGGUAGAAUGAGGUUUUAGCCU------------ l=23 a=1 
----------------------------------------------------------------UAGAAUGAGGUUUUAGCCUGA---------- l=21 a=4 (c,ma)
----------------------------------------------------------------UAGAAUGAGGUUUUAGCCUaA---------- l=21 a=1 

mb-01011
ax-1011011
ku-01
ss-111111111110
fn-111
